haf-6 | GeneID:171694 | Caenorhabditis elegans

Gene Summary

[ ] NCBI Entrez Gene

Gene ID	171694	Official Symbol	haf-6
Locus	Y48G8AL.11	Gene Type	protein-coding
Synonyms
Full Name	N/A
Description	HAlF transporter (PGP related)
Chromosome	N/A
Also Known As	HAlF transporter (PGP related) family member (haf-6)
Summary	N/A

Orthologs and Paralogs

[ ] Homologs - NCBI's HomoloGene Group: 5203

ID	Symbol	Protein	Species
GeneID:11194	ABCB8	NP_009119.2	Homo sapiens
GeneID:32208	CG1824	NP_572810.1	Drosophila melanogaster
GeneID:74610	Abcb8	NP_083296.2	Mus musculus
GeneID:171694	haf-6	NP_490828.3	Caenorhabditis elegans
GeneID:362302	Abcb8	NP_001007797.1	Rattus norvegicus
GeneID:463892	ABCB8	XP_519524.2	Pan troglodytes
GeneID:482800	ABCB8	XP_539916.2	Canis lupus familiaris
GeneID:548340	zgc:113037	NP_001017544.1	Danio rerio

Gene Classification

[ ] Gene Ontology

ID	Category	GO Term
GO:0016021	Component	integral to membrane
GO:0016887	Function	ATPase activity
GO:0042626	Function	ATPase activity, coupled to transmembrane movement of substances
GO:0005524	Function	ATP binding
GO:0017111	Function	nucleoside-triphosphatase activity
GO:0000166	Function	nucleotide binding
GO:0006810	Process	transport

RefSeq Isoforms

[ ] RefSeq Annotation and UniProt Database

No.	RefSeq RNA	RefSeq Protein	UniProt Equivalent
1	NM_058427	NP_490828

Transcript Sequences

[ ] Transcript Accession Number Cloud [ GenBank ]

NM_058427

Protein Sequences

[ ] Protein Accession Number Cloud [ GenPept ]

AAK29911 NP_490828

Transcript Cluster

Selected Publications

[ ] Gene-related publications indexed at PubMed

[ ] Mulder NJ, et al. (2003) "The InterPro Database, 2003 brings increased coverage and new features." Nucleic Acids Res. 31(1):315-318. PMID:12520011

InterPro, an integrated documentation resource of protein families, domains and functional sites, was created in 1999 as a means of amalgamating the major protein signature databases into one comprehensive resource. PROSITE, Pfam, PRINTS, ProDom, SMART and TIGRFAMs have been manually integrated and curated and are available in InterPro for text- and sequence-based searching. The results are provided in a single format that rationalises the results that would be obtained by searching the member databases individually. The latest release of InterPro contains 5629 entries describing 4280 families, 1239 domains, 95 repeats and 15 post-translational modifications. Currently, the combined signatures in InterPro cover more than 74% of all proteins in SWISS-PROT and TrEMBL, an increase of nearly 15% since the inception of InterPro. New features of the database include improved searching capabilities and enhanced graphical user interfaces for visualisation of the data. The database is available via a webserver (http://www.ebi.ac.uk/interpro) and anonymous FTP (ftp://ftp.ebi.ac.uk/pub/databases/interpro).

[ ] Camon E, et al. (2003) "The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro." Genome Res. 13(4):662-672. PMID:12654719

Gene Ontology Annotation (GOA) is a project run by the European Bioinformatics Institute (EBI) that aims to provide assignments of terms from the Gene Ontology (GO) resource to gene products in a number of its databases (http://www.ebi.ac.uk/GOA). In the first stage of this project, GO assignments have been applied to a data set representing the complete human proteome by a combination of electronic mappings and manual curation. This vocabulary has also been applied to the nonredundant proteome sets for all other completely sequenced organisms as well as to proteins from a wide range of organisms where the proteome is not yet complete.